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               Mass spectrometry-based metabolomic profilings of soft coral Lobophytum

               crassum across sites and seasons via multivariate analysis


                                                 2
                               1
               Kuan-Ying Lai,  Y u -Liang Yang,  Chih-Chuang Liaw*     ,1,3

               1  Department of Marine Biotechnology and Resources, National Sun Yat-sen University,
                 Kaohsiung, Taiwan
               2  Agricultural Biotechnology Research Center, Academia Sinica, Taipei 11529, Taiwan
               3  Doctoral Degree Program in Marine Biotechnology, National Sun Yat-sen University,
                 Kaohsiung, Taiwan.
               * E-mail: ccliaw@mail.nsysu.edu.tw

               Abstract
                  Soft corals of the genus Lobophytum are prolific producers of structurally diverse secondary
               metabolites, particularly diterpenoids and steroids, many of which exhibit potent ecological and
               pharmacological  activities.  Over  the  past  three  decades,  soft  coral  samples  collected  non-
               systematically from various sites around Taiwan have been studied for their natural products.
               However, the environmental modulation of these metabolites remains poorly understood. Using
               a curated database of natural products from Taiwanese soft corals, annotated with the collection
               sites and dates, we observed that the oxidation levels of cembranes in Sclerophytum flexibile
               and  Lobophytum  crassum  appear  to  increase  with  rising  seawater  temperatures,  based  on
               repeated collections of eight species across multiple locations. To investigate the influence of
               environmental conditions on secondary metabolism, we applied a PCA loading-guided feature-
               ranking strategy, integrated with compound annotation with Sirius, to analyze seasonal and
               geographic shifts in the metabolomes of L. crassum that we transplanted in Dongyupingyu Islet,
               Badouzi farming pond, and Kenting.Multivariate statistical analysis (PCA, PLS-DA/OPLS-DA)
               revealed  that  both  geographic  location  and  seasonal  variation  significantly  contributed  to
               metabolic  divergence.  PCA  results  showed  more  pronounced  when  restricted  to  terpenoid
               features,  indicating  that  terpenoids  are  major  drivers  of  site-specific  variation.  Systematic
               annotation of features and chemical classes further demonstrated that diterpenoids and other
               lipid-related compounds are key contributors to seasonal differentiation. Oxidized terpenoids
               were more abundant in summer samples, whereas less oxidized features were predominant in
               winter samples. These findings highlight the strong influence of seasonal temperature shifts on
               metabolite oxidation levels, providing new insights into the ecological and chemotaxonomic
               relevance of oxidative modifications in soft coral secondary metabolism.

               Keywords:  Lobophytum  crassum;  molecular  networking;  PCA;  Diterpene;  Soft  coral;
                          Metabolomics
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